Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov

Brian I Choi; Adriana Ene; Jingjie Du; Genevieve Johnson; Catherine Putonti; Christian H Schouw; Rimtas Dargis; Erik Senneby; Jens J Christensen; Alan J Wolfe

doi:10.1099/ijsem.0.006066

Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov

Brian I Choi, Adriana Ene, Jingjie Du, Genevieve Johnson, Catherine Putonti, Christian H Schouw, Rimtas Dargis, Erik Senneby, Jens J Christensen, Alan J Wolfe^*

^*Corresponding author af dette arbejde

Klinisk Mikrobiologisk Afdeling

Publikation: Bidrag til tidsskrift › Artikel › Forskning › peer review

Abstract

Average nucleotide identity analysis, based on whole genome sequences of 115 strains previously identified as Aerococcus urinae, an emerging uropathogen, discriminates at least six unique genomic taxa. The whole genome analysis affords clearer species boundaries over 16S rRNA gene sequencing and traditional phenotypic approaches for the identification and phylogenetic organization of Aerococcus species. The newly described species can be differentiated by matrix-assisted laser desorption ionization time-of-flight analysis of protein signatures. We propose the emendation of the description of A. urinae (type strain ATCC 51268T = CCUG 34223T=NCFB 2893) and the names of Aerococcus tenax sp. nov. (ATCC TSD-302T = DSM 115700T = CCUG 76531T=NR-58630T), Aerococcus mictus sp. nov. (ATCC TSD-301T = DSM 115699T = CCUG 76532T=NR-58629T), and Aerococcus loyolae sp. nov. (ATCC TSD-300T = DSM 115698T = CCUG 76533T=NR-58628T) for three of the newly identified genomic taxa.

Originalsprog	Engelsk
Tidsskrift	International Journal of Systematic and Evolutionary Microbiology
Vol/bind	73
Udgave nummer	9
DOI	https://doi.org/10.1099/ijsem.0.006066
Status	Udgivet - sep. 2023

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10.1099/ijsem.0.006066

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Choi, B. I., Ene, A., Du, J., Johnson, G., Putonti, C., Schouw, C. H., Dargis, R., Senneby, E., Christensen, J. J., & Wolfe, A. J. (2023). Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov. International Journal of Systematic and Evolutionary Microbiology, 73(9). https://doi.org/10.1099/ijsem.0.006066

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title = "Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov",

abstract = "Average nucleotide identity analysis, based on whole genome sequences of 115 strains previously identified as Aerococcus urinae, an emerging uropathogen, discriminates at least six unique genomic taxa. The whole genome analysis affords clearer species boundaries over 16S rRNA gene sequencing and traditional phenotypic approaches for the identification and phylogenetic organization of Aerococcus species. The newly described species can be differentiated by matrix-assisted laser desorption ionization time-of-flight analysis of protein signatures. We propose the emendation of the description of A. urinae (type strain ATCC 51268T = CCUG 34223T=NCFB 2893) and the names of Aerococcus tenax sp. nov. (ATCC TSD-302T = DSM 115700T = CCUG 76531T=NR-58630T), Aerococcus mictus sp. nov. (ATCC TSD-301T = DSM 115699T = CCUG 76532T=NR-58629T), and Aerococcus loyolae sp. nov. (ATCC TSD-300T = DSM 115698T = CCUG 76533T=NR-58628T) for three of the newly identified genomic taxa.",

keywords = "Aerococcus/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, DNA, Bacterial/genetics, Bacterial Typing Techniques, Base Composition, Fatty Acids/chemistry",

author = "Choi, {Brian I} and Adriana Ene and Jingjie Du and Genevieve Johnson and Catherine Putonti and Schouw, {Christian H} and Rimtas Dargis and Erik Senneby and Christensen, {Jens J} and Wolfe, {Alan J}",

year = "2023",

month = sep,

doi = "10.1099/ijsem.0.006066",

language = "English",

volume = "73",

journal = "International Journal of Systematic and Evolutionary Microbiology",

issn = "1466-5026",

publisher = "Microbiology Society",

number = "9",

}

Choi, BI, Ene, A, Du, J, Johnson, G, Putonti, C, Schouw, CH, Dargis, R, Senneby, E, Christensen, JJ & Wolfe, AJ 2023, 'Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov', International Journal of Systematic and Evolutionary Microbiology, bind 73, nr. 9. https://doi.org/10.1099/ijsem.0.006066

Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov. / Choi, Brian I; Ene, Adriana; Du, Jingjie et al.
I: International Journal of Systematic and Evolutionary Microbiology, Bind 73, Nr. 9, 09.2023.

Publikation: Bidrag til tidsskrift › Artikel › Forskning › peer review

TY - JOUR

T1 - Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov

AU - Choi, Brian I

AU - Ene, Adriana

AU - Du, Jingjie

AU - Johnson, Genevieve

AU - Putonti, Catherine

AU - Schouw, Christian H

AU - Dargis, Rimtas

AU - Senneby, Erik

AU - Christensen, Jens J

AU - Wolfe, Alan J

PY - 2023/9

Y1 - 2023/9

N2 - Average nucleotide identity analysis, based on whole genome sequences of 115 strains previously identified as Aerococcus urinae, an emerging uropathogen, discriminates at least six unique genomic taxa. The whole genome analysis affords clearer species boundaries over 16S rRNA gene sequencing and traditional phenotypic approaches for the identification and phylogenetic organization of Aerococcus species. The newly described species can be differentiated by matrix-assisted laser desorption ionization time-of-flight analysis of protein signatures. We propose the emendation of the description of A. urinae (type strain ATCC 51268T = CCUG 34223T=NCFB 2893) and the names of Aerococcus tenax sp. nov. (ATCC TSD-302T = DSM 115700T = CCUG 76531T=NR-58630T), Aerococcus mictus sp. nov. (ATCC TSD-301T = DSM 115699T = CCUG 76532T=NR-58629T), and Aerococcus loyolae sp. nov. (ATCC TSD-300T = DSM 115698T = CCUG 76533T=NR-58628T) for three of the newly identified genomic taxa.

AB - Average nucleotide identity analysis, based on whole genome sequences of 115 strains previously identified as Aerococcus urinae, an emerging uropathogen, discriminates at least six unique genomic taxa. The whole genome analysis affords clearer species boundaries over 16S rRNA gene sequencing and traditional phenotypic approaches for the identification and phylogenetic organization of Aerococcus species. The newly described species can be differentiated by matrix-assisted laser desorption ionization time-of-flight analysis of protein signatures. We propose the emendation of the description of A. urinae (type strain ATCC 51268T = CCUG 34223T=NCFB 2893) and the names of Aerococcus tenax sp. nov. (ATCC TSD-302T = DSM 115700T = CCUG 76531T=NR-58630T), Aerococcus mictus sp. nov. (ATCC TSD-301T = DSM 115699T = CCUG 76532T=NR-58629T), and Aerococcus loyolae sp. nov. (ATCC TSD-300T = DSM 115698T = CCUG 76533T=NR-58628T) for three of the newly identified genomic taxa.

KW - Aerococcus/genetics

KW - Phylogeny

KW - RNA, Ribosomal, 16S/genetics

KW - Sequence Analysis, DNA

KW - DNA, Bacterial/genetics

KW - Bacterial Typing Techniques

KW - Base Composition

KW - Fatty Acids/chemistry

U2 - 10.1099/ijsem.0.006066

DO - 10.1099/ijsem.0.006066

M3 - Article

C2 - 37755156

SN - 1466-5026

VL - 73

JO - International Journal of Systematic and Evolutionary Microbiology

JF - International Journal of Systematic and Evolutionary Microbiology

IS - 9

ER -

Taxonomic considerations on Aerococcus urinae with proposal of subdivision into Aerococcus urinae, Aerococcus tenax sp. nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. nov

Abstract

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